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Categories of resources
Post-analysis categorization
Literature search
Post-survey categorization
Features validated in most cases
Gene expression
MicroRNA
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Primer designing
Protein-protein interactions (commonly used resources)
Protein structure prediction
Features not validated
Alternative splice form analysis
DNA motif detection
Microbiology
Multiple sequence alignment
Next generation sequencing
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Carbohydrates
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piRNA
Promoter prediction
Protein-protein interactions (all resources)
RNA structure prediction
SNP analysis
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Disease-gene relationships
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Gene/protein unified information
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Mass spectrometry
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Phylogeny/Taxonomy
Protein domains
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Protein-nucleic acid interactions
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Transcription factors and binding sites
Suggested Readings
Basic concepts
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Alphabetical list
Protein-protein interactions
Case studies
Computational analysis of HIV-1 resistance based on gene expression profiles and the virus-host interaction network
Identifying causal genes and dysregulated pathways in complex diseases
Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology
A comparative study of cancer proteins in the human protein-protein interaction network
Multi-level reproducibility of signature hubs in human interactome for breast cancer metastasis
Detection of molecular paths associated with insulitis and type 1 diabetes in non-obese diabetic mouse
Building disease-specific drug-protein connectivity maps from molecular interaction networks and PubMed abstracts
Mycobacterium tuberculosis interactome analysis unravels potential pathways to drug resistance
CGI: a new approach for prioritizing genes by combining gene expression and protein-protein interaction data
Protein-protein interactions more conserved within species than across species
Gene function prediction by a combined analysis of gene expression data and protein-protein interaction data
PAID
Functional modules by relating protein interaction networks and gene expression
Discovering molecular pathways from protein interaction and gene expression data
Protein-protein interaction map is a key gateway into liver regeneration
Building protein interaction maps for Down's syndrome
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copyright © Dr. Kshitish Acharya K; all rights reserved
