| Tool name | 3DID - 3D Interacting Domains |
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| URL | http://3did.irbbarcelona.org/index.html |
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| Important features | Database of 3D Interaction Domains (3did). This is a collection of domain-domain interactions in proteins with known 3D structure. |
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| Citations | Stein A, Russell RB, Aloy P. 3did: interacting protein domains of known three-dimensional structure. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D413-7. PubMed PMID: 15608228.
Stein A, C\E9ol A, Aloy P. 3did: identification and classification of domain-based interactions of known three-dimensional structure. Nucleic Acids Res. 2011 Jan;39(Database issue):D718-23. Epub 2010 Oct 21. PubMed PMID: 20965963.
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| Year of publication | 2005 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | Database, Domain Prediction |
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| Category | Online/Downloadable, Free for academic |
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| Platform | |
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| Other features | Uses Jmol for structure visualisation, user needs to have Java and JavaScript installed. |
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| Other citations | Stein A, Panjkovich A, Aloy P. 3did Update: domain-domain and peptide-mediated interactions of known 3D structure. Nucleic Acids Res. 2009 Jan;37(Database issue):D300-4. Epub 2008 Oct 25. PubMed PMID: 18953040.
Stein A, C\E9ol A, Aloy P. 3did: identification and classification of domain-based interactions of known three-dimensional structure. Nucleic Acids Res. 2011 Jan;39(Database issue):D718-23. Epub 2010 Oct 21. PubMed PMID: 20965963. |
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| Description | Tools for prediction of coiled coil regions |
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