PPI_CUS

Post-analysis categorization
- Literature search
Post-survey categorization
- Features validated in most cases
- Features not validated
Simple lists
Preliminary lists

Tool name

MitoInteractome - Mitochondrial Protein Interactome Database

URL

http://mitointeractome.kobic.kr

Important features

A resource specific to mitochondrial PPIs. Predicts interactions based on the domain/interfaces/sites. Provides inferred interactions (e.g., human interactions inferred from mouse & rat).

Citations

Reja R, Venkatakrishnan AJ, Lee J, Kim BC, Ryu JW, Gong S, Bhak J, Park D. MitoInteractome: mitochondrial protein interactome database, and its application in 'aging network' analysis. BMC Genomics. 2009 Dec 3;10 Suppl 3:S20. PubMed PMID: 19958484; PubMed Central PMCID: PMC2788373.

Year of publication

2009

Rank by usage frequency

100

Comments

Function

Predicted PPIs based on the domain/interfaces/sites, Inferred PPIs (e.g., human PPIs inferred from mouse), Predict PPI network in a species by using ortholog information, Cell component specific (e.g., nucleus) PPIs, PPIs of plants proteins, Predicted PPIs based on the protein structure, PPIs for given protein sequence (BLAST search)

Category

http://mitointeractome.kobic.kr, A resource specific to mitochondrial PPIs. Predicts interactions based on the domain/interfaces/sites. Provides inferred interactions (e.g., human interactions inferred from mouse & rat)., Reja R, Venkatakrishnan AJ, Lee J, Kim BC, Ryu JW, Gong S, Bhak J, Park D. MitoInteractome: mitochondrial protein interactome database, and its application in 'aging network' analysis. BMC Genomics. 2009 Dec 3;10 Suppl 3:S20. PubMed PMID: 19958484; PubMed Central PMCID: PMC2788373., 2009, 100

Online/downloadable

Online

Downloadable

Registration required

Free

Paid

Working status

Functional

Function

PPIs for a specific protein family (e.g., PDZ)