ngs_backbone | Tool name | ngs_backbone |
|---|
| URL | http://bioinf.comav.upv.es/ngs_backbone/index.html |
|---|
| Important features | 1. It is capable of cleaning reads, de novo assembly or mapping against a reference and annotate SNPs, SSRs, ORFs.
2. Used in transcriptome analysis and sometimes in genome analysis. |
|---|
| Citations | |
|---|
| Year of publication | Not available |
|---|
| Rank by usage frequency | 100 |
|---|
| Comments | |
|---|
| Function | De novo assembler, SNP discovery |
|---|
| Category | Downloadable |
|---|
| License | AGPL |
|---|
| Status | |
|---|
| Input file format | FASTA, FASTQ |
|---|
| Output file format | BAM, VCF, GFF |
|---|
| Operating system | Unix,linux |
|---|
| Operating language | |
|---|
| Platform | Sanger, Illumina/Solexa, Roche 454 |
|---|
| Maintained by |
M. Hackenberg, G. Barturen and J.L. Oliver |
|---|
| Downloadable file format | |
|---|
| Submission file format | |
|---|
| |
