VARiD - Variation Detection | Tool name | VARiD - Variation Detection |
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| URL | http://compbio.cs.utoronto.ca/varid/ |
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| Important features | 1.Detect SNP and indel from SOLiD color space and regular letter space reads.
2. Identify heterozygous, homozygous and tri-allelic SNPs, as well as micro-indels. |
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| Citations | Dalca AV, Rumble SM, Levy S, Brudno M. VARiD: a variation detection framework for color-space and letter-space platforms. Bioinformatics. 2010 Jun
15;26(12):i343-9. PubMed PMID: 20529926; PubMed Central PMCID: PMC2881369. |
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| Year of publication | 2010 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | SNP discovery, Indel discovery |
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| Category | Free, Downloadable |
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| License | GPL |
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| Status | |
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| Input file format | .sam, .bam
reference FASTA file |
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| Output file format | |
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| Operating system | Linux/Unix 32/64bit
Mac OS X 32/64bit |
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| Operating language | C |
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| Platform | ABI SOLiD, Illumina/Solexa, Roche 454 |
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