SplitSeek | Tool name | SplitSeek |
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| URL | http://solidsoftwaretools.com/gf/project/splitseek/ |
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| Important features | 1. It is for de novo splice junction prediction.
2. It can be used to detect splicing events and transcripts.
3. It can be also applied to detect indels. |
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| Citations | Ameur A, Wetterbom A, Feuk L, Gyllensten U. Global and unbiased detection of splice junctions from RNA-seq data. Genome Biol. 2010;11(3):R34. Epub 2010 Mar 17. PubMed PMID: 20236510; PubMed Central PMCID: PMC2864574. |
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| Year of publication | 2010 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | RNA seq alignment |
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| Category | Free, Downloadable |
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| License | GPL |
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| Status | |
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| Input file format | csFasta |
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| Output file format | BED, BEDPE |
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| Operating system | Not Applicable |
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| Operating language | Perl |
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| Platform | ABI SOLiD |
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| Maintained by | Applied biosystems |
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| Downloadable file format | |
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| Submission file format | |
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