SpliceMap | Tool name | SpliceMap |
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| URL | http://www.stanford.edu/group/wonglab/SpliceMap/ |
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| Important features | 1. It is a tool used for identification of splice junction from RNA seq data.
2. Highly sensitive and specific.
3. It makes use of paired-end and long reads. |
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| Citations | Au KF, Jiang H, Lin L, Xing Y, Wong WH. Detection of splice junctions from paired-end RNA-seq data by SpliceMap. Nucleic Acids Res. 2010 Aug;38(14):4570-8. Epub 2010 Apr 5. PubMed PMID: 20371516; PubMed Central PMCID: PMC2919714. |
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| Year of publication | 2010 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | RNA seq alignment |
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| Category | Free, Downloadable |
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| License | |
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| Status | |
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| Input file format | |
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| Output file format | SAM |
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| Operating system | Linux |
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| Operating language | Python, C++ |
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| Platform | |
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| Maintained by | Kin Fai Au, John Mu, Stanford University
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| Downloadable file format | |
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