SliderII | Tool name | SliderII |
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| URL | http://www.bcgsc.ca/platform/bioinfo/software/SliderII |
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| Important features | 1. High quality SNP calling using Illumina data at minimal coverage.
2. Calibrate prb data before calling SNPs.
3. Utilize information about known SNPs of a target genome. |
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| Citations | Malhis N, Jones SJ. High quality SNP calling using Illumina data at shallow coverage. Bioinformatics. 2010 Apr 15;26(8):1029-35. Epub 2010 Feb 26. PubMed
PMID: 20190250. |
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| Year of publication | 2010 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | SNP discovery |
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| Category | Downloadable |
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| License | |
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| Status | |
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| Input file format | FASTA, FASTQ |
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| Output file format | .prb |
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| Operating system | Windows 32/64bit, Linux/Unix 32/64bit, Mac X OS 32/64bit |
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| Operating language | JAVA |
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| Platform | Illumina/Solexa |
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| Maintained by | Canada's Michael Smith Genome Sciences Centre
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| Downloadable file format | |
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| Submission file format | |
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