SeqMan NGen | Tool name | SeqMan NGen |
|---|
| URL | http://www.dnastar.com/t-products-seqman-ngen.aspx |
|---|
| Important features | 1. It is used for SNP discovery, Sequence assembly, coverage evaluation and consensus annotation.
2. It has integration with Lasergene. |
|---|
| Citations | |
|---|
| Year of publication | Not available |
|---|
| Rank by usage frequency | 100 |
|---|
| Comments | |
|---|
| Function | Alignment/Mapping, De novo assembler, Reference assembler, Transcriptome assembler, SNP discovery, Indel discovery, Software package |
|---|
| Category | Paid, Downloadable |
|---|
| License | network license |
|---|
| Status | |
|---|
| Input file format | FASTA, FASTQ, Scarf, SFF, SQD, ACE, PHD, ABI, GFF, CSFasta/CSQUAL (ABI SOLiD), SCF, TXT, GBK, SEQ |
|---|
| Output file format | BAM, SAM, or ACE files. |
|---|
| Operating system | Mac OS X, Windows XP x64, Windows Vista x64,
Windows 7 x64 |
|---|
| Operating language | |
|---|
| Platform | Illumina/Solexa, Roche 454, ABI SOLiD, Helicos |
|---|
| Maintained by | |
|---|
| Downloadable file format | |
|---|
| Submission file format | |
|---|
| |
