SOAPsnp | Tool name | SOAPsnp |
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| URL | http://soap.genomics.org.cn/soapsnp.html |
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| Important features | Mainly used for re-sequencing that can assemble consensus sequence for the genome on the known reference. Can identify SNPs. |
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| Citations | Li R, Li Y, Fang X, Yang H, Wang J, Kristiansen K, Wang J. SNP detection for massively parallel whole-genome resequencing. Genome Res. 2009 Jun;19(6): 1124-32. Epub 2009 May 6. PubMed PMID: 19420381; PubMed Central PMCID: PMC2694485. |
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| Year of publication | 2009 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | SNP discovery |
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| Category | Downloadable |
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| License | |
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| Status | |
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| Input file format | SOAPalign output |
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| Output file format | .glfv2, gpfv2 |
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| Operating system | Linux/Unix 64bit |
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| Operating language | C++ |
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| Platform | Illumina/Solexa |
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| Maintained by | Beijing Genomics Institute
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| Downloadable file format | |
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| Submission file format | |
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