SNP-o-matic | Tool name | SNP-o-matic |
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| URL | http://snpomatic.sourceforge.net/ |
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| Important features | 1. It is used for the analysis of Solexa reads and compares to the references sequence to find the known SNPs.
2. It is a stringent read mapping tool using indexing algorithm. |
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| Citations | Manske HM, Kwiatkowski DP. SNP-o-matic. Bioinformatics. 2009 Sep 15;25(18):2434-5. Epub 2009 Jul 2. PubMed PMID: 19574284; PubMed Central PMCID:
PMC2735664. |
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| Year of publication | 2009 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | SNP discovery |
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| Category | Downloadable |
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| License | |
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| Status | |
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| Input file format | FASTA, FASTQ |
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| Output file format | Pileup, CIGAR, GFF, SAM |
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| Operating system | |
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| Operating language | C++, C |
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| Platform | Illumina/Solexa |
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| Maintained by | |
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| Downloadable file format | |
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| Submission file format | |
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