SISSRs - Site Identification from Short Sequence Reads | Tool name | SISSRs - Site Identification from Short Sequence Reads |
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| URL | http://sissrs.rajajothi.com/ |
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| Important features | 1. It is Site Identification from Short Sequence Reads.
2. It identifies binding site from next generation ChIP seq reads. |
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| Citations | Jothi R, Cuddapah S, Barski A, Cui K, Zhao K. Genome-wide identification of invivo protein-DNA binding sites from ChIP-Seq data. Nucleic Acids Res. 2008
Sep;36(16):5221-31. Epub 2008 Aug 6. PubMed PMID: 18684996; PubMed Central PMCID:
PMC2532738. |
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| Year of publication | 2008 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | ChIP seq analysis |
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| Category | Free, Downloadable |
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| License | |
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| Status | |
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| Input file format | BED |
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| Output file format | BED, WIG |
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| Operating system | Unix, Linux |
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| Operating language | Perl |
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| Platform | |
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| Maintained by | Raja Jothi, National Institutes of Health (NIH) |
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| Downloadable file format | |
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| Submission file format | |
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