SAMtools | Tool name | SAMtools |
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| URL | http://samtools.sourceforge.net |
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| Important features | Various utilities for processing alignments in the SAM format, including variant calling and alignment viewing. |
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| Citations | Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R; 1000 Genome Project Data Processing Subgroup. The Sequence Alignment/Map format and SAMtools. Bioinformatics. 2009 Aug 15;25(16):2078-9. Epub 2009 Jun 8.PMID: 195059 |
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| Year of publication | 2009 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | Visualization, SNP discovery |
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| Category | Free, Downloadable |
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| License | MIT License,
BSD License |
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| Status | Working |
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| Input file format | SAM, BAM |
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| Output file format | SAM, BAM, VCF/BCF |
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| Operating system | |
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| Operating language | C, Perl |
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| Platform | ABI SOLiD, Illumina/Solexa, Roche 454 |
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| Maintained by | |
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| Downloadable file format | |
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| Submission file format | |
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