RNA-MATE | Tool name | RNA-MATE |
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| URL | http://grimmond.imb.uq.edu.au/RNA-MATE/ |
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| Important features | 1. RNA MATE is Mapping and Alignment Tool for Expression.
2. It is a tool used aligning RNA seq data from next generation sequencing platforms.
3. It aligns color space data. |
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| Citations | Cloonan N, Xu Q, Faulkner GJ, Taylor DF, Tang DT, Kolle G, Grimmond SM. RNA-MATE: a recursive mapping strategy for high-throughput RNA-sequencing data. Bioinformatics. 2009 Oct 1;25(19):2615-6. Epub 2009 Jul 30. PubMed PMID: 19648138; PubMed Central PMCID: PMC2752615. |
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| Year of publication | 2009 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | RNA seq alignment |
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| Category | Free, Downloadable |
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| License | GNU GPL |
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| Status | |
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| Input file format | CSFASTA |
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| Output file format | CSFASTA, BED |
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| Operating system | Unix |
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| Operating language | Perl |
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| Platform | ABI SOLiD |
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