PanGEA | Tool name | PanGEA |
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| URL | http://www.kofler.or.at/bioinformatics/PanGEA/ |
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| Important features | 1. PanGEA can be used for the analysis of gene expression using next-generation sequencing technologies.
2. Transcriptome profiling using next-generation sequencing technologies has several advantages compared to the well established method: microarrays platform.
3. Using sequences, allele specific gene-expression, alternative splicing, inter-species differences in gene expression, and relative expression levels between genes can easily be investigated. |
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| Citations | Kofler R, Teixeira Torres T, Lelley T, Schlotterer C.
PanGEA: identification of allele specific gene expression using the 454 technology.
BMC Bioinformatics. 2009 May 14;10:143.
PMID: 19442283 |
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| Year of publication | 2009 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | SNP discovery |
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| Category | Downloadable |
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| License | GNU GPL V3 |
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| Status | |
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| Input file format | |
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| Operating system |
Windows, Linux, Mac OsX |
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| Operating language | C |
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| Platform | Roche 454 |
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