| Tool name | Novoalign |
|---|
| URL | http://www.novocraft.com/main/index.php |
|---|
| Important features | 1. Alignment tool for aligning short sequences against an indexed set of reference sequences.
2. Aligning Illumina single-end and paired-end reads.
3. Gapped alignment on single-end reads and paired-end reads
4. Single pass alignment for Bisulphite treated DNA. |
|---|
| Citations | |
|---|
| Year of publication | Not available |
|---|
| Rank by usage frequency | 100 |
|---|
| Comments | |
|---|
| Function | RNA seq alignment, ChIP seq analysis |
|---|
| Category | Downloadable |
|---|
| License | |
|---|
| Status | |
|---|
| Input file format | FASTA, FASTQ |
|---|
| Output file format | SAM and native output formats |
|---|
| Operating system | Linux/Unix 32/64bit |
|---|
| Operating language | C++ |
|---|
| Platform | Illumina/Solexa, ABI SOLiD |
|---|
| Maintained by | Novocraft Technologies Sdn. Bhd. Kuala Lumpur, Malaysia
|
|---|
| Downloadable file format | |
|---|
| Submission file format | |
|---|