NPS - Nucleosome Positioning from Sequencing | Tool name | NPS - Nucleosome Positioning from Sequencing |
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| URL | http://liulab.dfci.harvard.edu/NPS/ |
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| Important features | 1. It is a software which can identify nucleosome position of a histone modification at the nucleosome level from the chip seq data.
2. It uses poisson distribution for the p-value estimation for histone modification. |
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| Citations | Zhang Y, Shin H, Song JS, Lei Y, Liu XS. Identifying positioned nucleosomes
with epigenetic marks in human from ChIP-Seq. BMC Genomics. 2008 Nov 13;9:537.
PubMed PMID: 19014516; PubMed Central PMCID: PMC2596141.
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| Year of publication | 2008 |
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| Rank by usage frequency | 96 |
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| Comments | |
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| Function | ChIP seq analysis |
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| Category | Free, Downloadable |
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| Operating language | Python 2.5 |
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