MoDIL - Mixture of Distributions Indel Locator | Tool name | MoDIL - Mixture of Distributions Indel Locator |
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| URL | http://compbio.cs.toronto.edu/modil/ |
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| Important features | 1. MoDIL says to be the first method to identify medium size (20-50 bp) indels from high-throughput sequencing data while there exists several methods identifying small and large indels.
2. As an input MoDIL takes sequence reads. MoDIL uses EM algorithmA0 and Kolmogorov-Smirnov test while doing the analysis. As an output program it gives identified indels. |
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| Citations | Lee S, Hormozdiari F, Alkan C, Brudno M.
MoDIL: detecting small indels from clone-end sequencing with mixtures of distributions.
Nat Methods. 2009 Jul;6(7):473-4. Epub 2009 May 31.
PMID: 19483690 |
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| Year of publication | 2009 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | SNP discovery, Indel discovery, Structural variant discovery |
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| Category | Free, Downloadable |
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| Input file format | Text file |
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| Output file format | Text file |
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| Maintained by | MarthLab |
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