MapNext | Tool name | MapNext |
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| URL | http://evolution.sysu.edu.cn/english/software/mapnext.htm |
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| Important features | 1. Facilitate the conversion of text based output into a SQL database.
2. Provides useful information about the SNP detection from population sequences.
3. Used for RNA-Seq Alignment. |
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| Citations | Bao H, Xiong Y, Guo H, Zhou R, Lu X, Yang Z, Zhong Y, Shi S. MapNext: a
software tool for spliced and unspliced alignments and SNP detection of short
sequence reads. BMC Genomics. 2009 Dec 3;10 Suppl 3:S13. PubMed PMID: 19958476;
PubMed Central PMCID: PMC2788365. |
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| Year of publication | 2009 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | RNA seq alignment, SNP discovery |
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| Category | Free, Downloadable |
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| License | |
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| Status | |
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| Input file format | Reference file in FASTA format, reads in FASTA or FASTQ format. |
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| Output file format | MAP, Cluster file, Spliced map file, SNP file
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| Operating system | Linux/Unix |
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| Operating language | C++, Perl |
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| Platform | Illumina/Solexa |
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| Maintained by | |
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| Downloadable file format | |
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