MIRA | Tool name | MIRA |
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| URL | http://sourceforge.net/apps/mediawiki/mira-assembler/index.php |
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| Important features | 1. MIRA 3 is able to perform true hybrid de novo assemblies using reads gathered through Sanger, 454 or Solexa sequencing technologies.
2. It assembles reads instead of a mix of shredded consensus sequence and reads.
3. MIRA 3 is for assembly of genomic data as well as assembly of EST data from one or multiple strains/organisms and MIRA searches EST SNPs for assembly of EST data from different strains (or organisms) and SNP detection within this assembly. |
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| Citations | Chevreux et al. (1999) Genome Sequence Assembly Using Trace Signals and Additional Sequence Information Computer Science and Biology: Proceedings of the German Conference on Bioinformatics (GCB) 99, pp. 45-56. |
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| Year of publication | 1999 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | De novo assembler, EST assembler, SNP discovery |
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| Category | Free, Downloadable |
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| License | |
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| Status | |
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| Input file format | FASTA, FASTQ, CAF, GBK, GBFF, EXP,
PHD, SCF, XML traceinfo |
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| Output file format | CAF, GAP4, ACE, HTML, FASTA |
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| Operating system | Linux, Unix, MacOS |
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| Operating language | C++ |
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| Platform | Sanger, Illumina/Solexa, Roche 454, Ion Torrent, PacBio |
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| Maintained by | |
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| Downloadable file format | |
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| Submission file format | |
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