MACS - Model based Analysis of ChIP-Seq | Tool name | MACS - Model based Analysis of ChIP-Seq |
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| URL | http://liulab.dfci.harvard.edu/MACS/ |
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| Important features | 1. MACS is Model based Analysis of ChIP Seq.
2. It is used to find the binding site on DNA fragments. |
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| Citations | Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C,
Myers RM, Brown M, Li W, Liu XS. Model-based analysis of ChIP-Seq (MACS). Genome
Biol. 2008;9(9):R137. Epub 2008 Sep 17. PubMed PMID: 18798982; PubMed Central
PMCID: PMC2592715.
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| Year of publication | 2008 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | ChIP seq analysis |
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| Category | Free, Downloadable |
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| License | Artistic License |
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| Status | |
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| Input file format | ELAND, BED, ELANDMULTI, ELANDEXPORT, ELANDMULTIPET, SAM, BAM, BOWTIE |
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| Output file format | BED, WIG |
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| Operating system | platform-independent |
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| Operating language | Python |
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| Platform | |
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| Maintained by | Dana Farber Cancer Institute |
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| Downloadable file format | |
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| Submission file format | |
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