HPeak | Tool name | HPeak |
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| URL | http://www.sph.umich.edu/csg/qin/HPeak |
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| Important features | 1. It is a tool used to find DNA regions where proteins bind.
2. It has better preference over other ChIP seq analysis tools.
3. It is highly sensitive and specific. |
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| Citations | Qin ZS, Yu J, Shen J, Maher CA, Hu M, Kalyana-Sundaram S, Yu J, Chinnaiyan AM.
HPeak: an HMM-based algorithm for defining read-enriched regions in ChIP-Seq
data. BMC Bioinformatics. 2010 Jul 2;11:369. PubMed PMID: 20598134; PubMed
Central PMCID: PMC2912305.
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| Year of publication | 2010 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | ChIP seq analysis |
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| Category | Free |
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| License | |
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| Status | |
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| Input file format | ELAND, a modified BED or CUSTOM
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| Output file format | .txt, .out, .sum, .log, .seq, .wig
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| Operating system | Linux 64 bit |
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| Operating language | Perl and C++ |
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