GenoMiner | Tool name | GenoMiner |
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| URL | http://www.astridbio.com/genominer.html |
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| Important features | 1. GenoMiner comes with a great number of software tools for de novo and reference assembly, as well as many other applications for secondary and tertiary analysis of NGS data.
2. It also has a user friendly graphical interface with wizard-like pipelines for preprocessing, reference assembly, de novo assembly, ChIPSeq analysis and other miscellaneous bioinformatics tasks. |
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| Citations | Castrignano T, De Meo PD, Grillo G, Liuni S, Mignone F, Talamo IG, Pesole G. GenoMiner: a tool for genome-wide search of coding and non-coding conserved sequence tags. Bioinformatics. 2006 Feb 15;22(4):497-9. Epub 2005 Nov 2. PubMed PMID: 16267081. |
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| Year of publication | 2006 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | De novo assembler, Reference assembler, ChIP seq analysis, RNA seq analysis |
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| Category | Paid, Downloadable |
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| Operating system | Linux |
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| Operating language | Java |
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| Platform | ABI SOLiD, Roche 454 and Illumina/Solexa |
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