GSNAP - Genomic Short-read Nucleotide Alignment Program | Tool name | GSNAP - Genomic Short-read Nucleotide Alignment Program |
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| URL | http://research-pub.gene.com/gmap/ |
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| Important features | 1. GSNAP is Genomic Short-read Nucleotide Alignment Program.
2. It can align paired-end and single-end data.
3. It can be used to detect splicing. |
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| Citations | Wu TD, Nacu S. Fast and SNP tolerant detection of complex variants and splicing in short reads. Bioinformatics. 2010 Apr 1;26(7):873-81. Epub 2010 Feb
10. PubMed PMID: 20147302; PubMed Central PMCID: PMC2844994. |
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| Year of publication | 2010 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | RNA seq alignment, Bisulphite mapping |
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| Category | Free, Downloadable |
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| License | |
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| Status | |
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| Input file format | FASTA, FASTQ |
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| Output file format | SAM, FASTA |
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| Operating system | Unix, Cygwin on Windows |
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| Operating language | C, Perl |
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| Platform | |
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| Maintained by | Genentech |
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| Downloadable file format | |
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| Submission file format | |
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