FindPeaks | Tool name | FindPeaks |
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| URL | http://sourceforge.net/apps/mediawiki/vancouvershortr/index.php?title=FindPeaks |
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| Important features | 1. Used for genomics, SNP discovery.
2. Contains the 'FindPeaks' application for Chip-Seq and RNA-Seq analysis.
3. It has a nascent database for storing SNPs across multiple libraries. |
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| Citations | Fejes, AP, Robertson, G, Bilenky, M,
Varhol, R, Bainbridge, M, Jones, SJ (2008). FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology. Bioinformatics, 24, 15:1729-30.[PMID: 18599518] |
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| Year of publication | 2008 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | Alignment/Mapping, SNP discovery, ChIP seq analysis |
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| Category | Free, Downloadable |
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| License | GPL |
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| Status | |
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| Input file format | BED, Maq, SAM, Bowtie, Eland, FASTA, Mapview |
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| Output file format | Wig, Peaks |
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| Operating system | Linux, Windows, MacOS |
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| Operating language | Java |
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| Platform | |
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| Maintained by | Bioinformatics Laboratory of Institut Curie (Paris).
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| Downloadable file format | |
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| Submission file format | |
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