| Tool name | CRISP |
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| URL | http://www.stsiweb.org/index.php/infrastructure/software_data/variant_detection_for_pooled_sequence_data_crisp/ |
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| Important features | 1. It is used for the identification of Single Nucleotide Polymorphisms (SNPs) from pooled sequencing.
2. It identifies both rare and common variants. |
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| Citations | Bansal V. A statistical method for the detection of variants from
next-generation resequencing of DNA pools. Bioinformatics. 2010 Jun 15;26(12):i318-24. PubMed PMID: 20529923; PubMed Central PMCID: PMC2881398. |
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| Year of publication | 2010 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | SNP discovery, Indel discovery |
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| Category | Free, Downloadable |
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| License | |
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| Status | |
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| Input file format | SAM |
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| Output file format | VCF |
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| Operating system | |
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| Operating language | Python |
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| Platform | Illumina/Solexa |
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| Maintained by | Matthias Haimel, Ensembl Genomes team
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| Downloadable file format | |
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| Submission file format | |
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