| Tool name | Bambino |
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| URL | https://cgwb.nci.nih.gov/goldenPath/bamview/documentation/index.html |
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| Important features | 1. Capable of pooling data from multiple source files.
2. It has graphical viewer and SNP/indel detector.
3. Displays mappings of dbSNP SNP sites and reference protein sequences, using UCSC genome annotations.
4. Calculates protein coding changes caused by SNPs in NCBI RefSeqs. |
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| Citations | Edmonson MN, Zhang J, Yan C, Finney RP, Meerzaman DM, Buetow KH. Bambino: a variant detector and alignment viewer for next-generation sequencing data in the SAM/BAM format. Bioinformatics. 2011 Mar 15;27(6):865-6. Epub 2011 Jan 28. PubMed PMID: 21278191; PubMed Central PMCID: PMC3051333. |
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| Year of publication | 2011 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | SNP discovery, Indel discovery |
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| Category | Downloadable |
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| License | |
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| Status | |
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| Input file format | SAM, BAM |
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| Output file format | |
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| Operating system | Windows 32/64bit
Linux/Unix 32/64bit
Mac OS X 32/64bit |
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| Operating language | Java |
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| Platform | |
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| Maintained by | Baylor College of Medicine Human Genome Sequencing Center
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| Downloadable file format | |
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| Submission file format | |
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