StarMir | Tool name | StarMir |
|---|
| URL | http://sfold.wadsworth.org |
|---|
| Important features | Bioinformatic tool for target identification of microRNAs including those that lack conserved sites, non-conserved human microRNAs, and poorly conserved viral mRNAs. |
|---|
| Citations | Long D, Chan CY, Ding Y. Analysis of microRNA-target interactions by a target
structure based hybridization model. Pac Symp Biocomput. 2008:64-74. PubMed PMID:
18232104.
|
|---|
| Year of publication | 2008 |
|---|
| Rank by usage frequency | 100 |
|---|
| Comments | Downloadable on request |
|---|
| Function | FIND TARGET: non conserved, SPECIES: human, http://sfold.wadsworth.org , Bioinformatic tool for target identification of microRNAs including those that lack conserved sites- non-conserved human microRNAs- and poorly conserved viral mRNAs. , Long D- Chan CY- Ding Y. Analysis of microRNA-target interactions by a target
structure based hybridization model. Pac Symp Biocomput. 2008:64-74. PubMed PMID:
18232104.
, 2008, 100, Downloadable on request, Online, I. QUERY OR INPUT DATA: 1. Input or upload microRNA sequence and target sequence (3' UTR required- if possible 5' UTR and CDS) in FASTA format (size limit of mRNA: 10000 nucleotides) 2. Enter email ID for link to results 3. For other parameters default values are provided. II. OUTPUT DATA: details on energetic characterization- target site profile- target mirWIP score |
|---|
| Category | |
|---|
| |
