PMRD- Plant microRNA database | Tool name | PMRD- Plant microRNA database |
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| URL | http://bioinformatics.cau.edu.cn/PMRD/ |
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| Important features | Database on plant microRNA obtained from in-house data and public repositories and contains sequence information, secondary structure, target genes, expression profiles and a genome browser. |
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| Citations | Zhang Z, Yu J, Li D, Zhang Z, Liu F, Zhou X, Wang T, Ling Y, Su Z. PMRD: plant
microRNA database. Nucleic Acids Res. 2010 Jan;38(Database issue):D806-13. Epub
2009 Oct 6. PubMed PMID: 19808935; PubMed Central PMCID: PMC2808885.
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| Year of publication | 2010 |
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| Rank by usage frequency | 100 |
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| Comments | Predictions are downloadable |
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| Function | 1.1 FIND microRNA: precursor, FIND microRNA: mature form, FUNCTIONAL ANALYSIS: regulation/ expression, SPECIES: plant, http://bioinformatics.cau.edu.cn/PMRD/, Database on plant microRNA obtained from in-house data and public repositories and contains sequence information- secondary structure- target genes- expression profiles and a genome browser., Zhang Z- Yu J- Li D- Zhang Z- Liu F- Zhou X- Wang T- Ling Y- Su Z. PMRD: plant
microRNA database. Nucleic Acids Res. 2010 Jan;38(Database issue):D806-13. Epub
2009 Oct 6. PubMed PMID: 19808935; PubMed Central PMCID: PMC2808885.
, 2010, 100, Predictions are downloadable, Online, I. SPECIES SUPPORTED INCLUDE: Plant II. QUERY OR INPUT DATA: . 1. Browse by species 2. Search: by microRNA name (stem loop- mature)- chromosome number (start and end position)- target gene ID. 3. Enter microRNA/ stem-loop sequence d. Blast search: select program- blastn: Enter sequence in FASTA format f. MicroRNA prediction: Enter sequence in the length of 45 nt to 1000 nt 3. Expression III. OUTPUT DATA: details presented in tabular format on species- precursor- mature sequence- evidence etc. |
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