MicroRNA

Post-analysis categorization
- Literature search
Post-survey categorization
- Features validated in most cases
- Features not validated
Simple lists
Preliminary lists

Tool name

HOCTAR- Host gene oppositely correlated targets

URL

http://hoctar.tigem.it

Important features

Host gene oppositely correlated targets is used for prediction of microRNA targets and functional relationship between microRNAs and their target genes, based on a scoring system developed by comparison with transcriptomic data.

Citations

Gennarino VA, Sardiello M, Mutarelli M, Dharmalingam G, Maselli V, Lago G, Banfi S. HOCTAR database: a unique resource for microRNA target prediction. Gene. 2011 Jul 1;480(1-2):51-8. Epub 2011 Mar 22. PubMed PMID: 21435384; PubMed Central PMCID: PMC3113163.

Year of publication

2011

Rank by usage frequency

100

Comments

Function

FIND TARGET: database, SPECIES: human, http://hoctar.tigem.it, Host gene oppositely correlated targets is used for prediction of microRNA targets and functional relationship between microRNAs and their target genes- based on a scoring system developed by comparison with transcriptomic data. , Gennarino VA- Sardiello M- Mutarelli M- Dharmalingam G- Maselli V- Lago G- Banfi S. HOCTAR database: a unique resource for microRNA target prediction. Gene. 2011 Jul 1;480(1-2):51-8. Epub 2011 Mar 22. PubMed PMID: 21435384; PubMed Central PMCID: PMC3113163. , 2011, 100, Online, I. SPECIES SUPPORTED INCLUDE: human II. QUERY OR INPUT DATA: 1. Select a microRNA from the given list. 2. Enter a target gene symbol (HUGO Gene Name-approved). III. OUTPUT DATA: details on predicted microRNA targets and (generated by softwares such as miRanda- TargetScan and PicTar) and microRNAs. Categorizes the output in terms of top 10%- 20%- 50%.