Plant MPSS - Plant Massively Parallel Signature Sequencing | Tool name | Plant MPSS - Plant Massively Parallel Signature Sequencing |
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| URL | http://mpss.udel.edu |
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| Important features | MPSS database measure the expression level of most genes under defined conditions and provide information about potentially novel transcripts (antisense transcripts, alternative splice isoforms and regulatory intergenic transcripts). |
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| Citations | Nakano M, Nobuta K, Vemaraju K, Tej SS, Skogen JW, Meyers BC. Plant MPSS
databases: signature-based transcriptional resources for analyses of mRNA and
small RNA. Nucleic AcIDs Res. 2006 Jan 1;34(Database issue):D731-5. PubMed PMID:
16381968; PubMed Central PMCID: PMC1347440.
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| Year of publication | 2006 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | Species, Finds alternative splicing in Arabidopsis, Finds alternative splicing in other species |
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| Category | |
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| Input file format | Protein entry code, Signature sequence, Keyword for predicted function, by chromosome position, BAC clone name |
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| Output file format | |
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| Limitation | |
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