HS3D - Homo sapiens Splice Site Dataset | Tool name | HS3D - Homo sapiens Splice Site Dataset |
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| URL | http://www.sci.unisannio.it/docenti/rampone/ |
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| Important features | HS3D (Homo Sapiens Splice Sites Dataset) is a data set of Homo sapiens Exon, Intron and Splice regions extracted from GenBank Rel.123. |
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| Citations | Pasquale Pollastro and Salvatore Rampone. HS3D, a dataset of Homo sapiens splice regions, and its extraction procedure from a major public database.
Int. J. Mod. Phys. C 13, 1105 (2002). |
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| Year of publication | Not available |
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| Rank by usage frequency | 100 |
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| Comments | 1) Result is only downloadable. No search option is provided. 2) Intron-Exon true splice sites extracted from filtered Genbank and Intron- exon false splice sites extracted from genbank are downloadable in Zip format. |
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| Function | Exon detail, Exon detail: sequence, Intron detail, Intron detail: sequence, Species, Finds alternative splicing in human |
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| Category | |
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| Input file format | Ncbi, Pubmed, BLAST, Fasta3, CGG(computational Genomics Group), Bionavigator, Folding@hold from genome to structure, Sentiweb, Chemical databse service, Central Laboratory of the Research Council, NLM, EBI |
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