DEDB - Drosophila melanogaster Exon Database | Tool name | DEDB - Drosophila melanogaster Exon Database |
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| URL | http://proline.bic.nus.edu.sg/dedb/index.html |
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| Important features | It includes information on the exons of Drosophila melanogaster in a splicing graph form. A splicing graph viewer is available to visualize the splicing graph, which allows to check for the various forms of alternative splicing variants in an easy to understand way. |
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| Citations | Lee BT, Tan TW, Ranganathan S. DEDB: a database of Drosophila melanogaster exons in splicing graph form. BMC Bioinformatics. 2004 Dec 7;5:189. PubMed PMID:
15581431; PubMed Central PMCID: PMC538278. |
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| Year of publication | 2004 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | Exon detail, Exon detail: start/end, Exon detail: sequence, Exon detail: length, Exon detail direct information, Number of splice events, Types of alternative splice events, Display of splice events, Species, Finds alternative splicing in Drosophila |
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| Category | |
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| Input file format | Blast search, Flybase gene name, Flybase gene symbol, pfam accession number, pfam identifier. |
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| Output file format | |
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| Limitation | |
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