CONTRAST - CONditionally TRAined Search for Transcripts | Tool name | CONTRAST - CONditionally TRAined Search for Transcripts |
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| URL | http://contra.stanford.edu/contrast/ |
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| Important features | Predicts protein-coding genes from a multiple genomic alignment. It is designed for de novo predictions. It can also incorporate information from EST alignments. |
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| Citations | Gross SS, Do CB, Sirota M, Batzoglou S. CONTRAST: a discriminative, phylogeny-free approach to multiple informant de novo gene prediction. Genome Biol. 2007;8(12):R269. PubMed PMID: 18096039; PubMed Central PMCID: PMC2246271.
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| Year of publication | 2007 |
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| Rank by usage frequency | 1 |
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| Comments | Predicitions downloadable or can be browsed by using UCSC genome browser. |
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| Function | Species, Finds alternative splicing in human, Finds alternative splicing in rat, Finds alternative splicing in mouse, Finds alternative splicing in chicken, Finds alternative splicing in zebrafish, Finds alternative splicing in Drosophila |
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| Category | Downloadable |
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