BDGP - Berkeley Drosophila Genome Project | Tool name | BDGP - Berkeley Drosophila Genome Project |
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| URL | http://www.fruitfly.org/seq_tools/splice.html |
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| Important features | Used to predict the splite sites with the help of neural networks. It shows the intron/exon boundary as well. |
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| Citations | Spradling AC, Stern D, Beaton A, Rhem EJ, Laverty T, Mozden N, Misra S, Rubin GM. The Berkeley Drosophila Genome Project gene disruption project: Single P-element insertions mutating 25% of vital Drosophila genes. Genetics. 1999
Sep;153(1):135-77. PubMed PMID: 10471706; PubMed Central PMCID: PMC1460730.
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| Year of publication | 1999 |
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| Rank by usage frequency | 50 |
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| Comments | 1) Splice Site details include start position, end position and score for acceptor as well as donor sites. 2) The exon/Intron boundary is shown by enlarging the font size. |
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| Function | Splice site details, Species, Finds alternative splicing in human, Finds alternative splicing in Drosophila, Finds alternative splicing in other species |
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| Category | Online |
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| Input file format | FASTA sequence to be pasted |
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| Output file format | |
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| Limitation | Maximum allowed sequence length is 10,000 bases |
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