AgenDA - Alignment based Gene Detection Algorithm | Tool name | AgenDA - Alignment based Gene Detection Algorithm |
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| URL | http://bibiserv.techfak.uni-bielefeld.de/agenda/ |
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| Important features | Gene prediction tool performing searches for conserved splice sites and start/stop codons. It also identifies potential exons. |
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| Citations | Taher L, Rinner O, Garg S, Sczyrba A, Brudno M, Batzoglou S, Morgenstern B. AGenDA:homology-based gene prediction. Bioinformatics. 2003 Aug
12;19(12):1575-7. PubMed PMID: 12912840. |
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| Year of publication | 2003 |
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| Rank by usage frequency | 99 |
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| Comments | 1) Results are obtained in e-mail 2) Gene information provides Gene number. 3) Provides information about the reading frame (0,1,2) 4) Gives information about the DNA strand, whether + or - |
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| Function | Exon detail, Exon detail: number, Exon detail: start/end, Exon detail direct information, Predicted protein sequences, Gene Information, Species, Finds alternative splicing in chicken, Finds alternative splicing in other species |
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| Category | |
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| Input file format | Two Fasta Files |
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| Output file format | |
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| Limitation | |
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